ACTIVE WORKFLOW
The user can select workflows that he or she wishes, using workflow platform (KNIME), on a client PC or a server. Within the workflow platform various components or parameters can be specified.
We use a free version of KNIME developed at University of Konstanz. KNIME is an eclipse-based workflow platform and uses nodes as processing units. Users can construct workflows, read data, calculate, analyze and visualize by combining those nodes. We also develop dynamic analysis platforms using semantic web technologies.
Local PC
The user downloads the programs and executes on the user's PC. (e.g. Windows, Linux, MacOS) There are two types, a component type and a combination type.
Combination type
- Molecular Simulation Active Workflow *This service has been terminated.
- RNA Structure Prediction Active Workflow
- Protein Structure Prediction Active Workflow*This service has been terminated.
- PhylogeneticTree (DNA, RNA, Protein) Active Workflow*This service has been terminated.
- Installation manual for KNIME and combination type active workflow
- Combination type active workflow user's manual
Developed processing node
NODE name
Description
AISTViewer is a visualization node to display results of sequence analysis. At present, the node can display results of the following nodes:
CentroidFold_AIST: predicts RNA secondary structures.
=Ports=
in-port: connects to an out-port of each following KNIME node.
CentroidFold_AIST
=Views=
CentroidFold_AIST: displays PNG files of RNA secondary prediction result.
CentroidFold_AIST: predicts RNA secondary structures.
=Ports=
in-port: connects to an out-port of each following KNIME node.
CentroidFold_AIST
=Views=
CentroidFold_AIST: displays PNG files of RNA secondary prediction result.
AutoDockVina_AIST is a node that executes AUTODOCK VINA, which is popular protein-ligand docking software developed at Scripps Institute(http://vina.scripps.edu/), via REST. The user needs to provide two things. A target protein PDB file (a single chain protein NOT a protein complex) without bound ligands and a PDB-formatted molecule file. Furthermore, user can execute AutoDockVina by specifying binding site coordinate (x, y, z). If user doesn't specify that, the program automatically calculates search spaces and coordinates of the center.
=Options=
Binding Site Coordinates (X, Y, Z)
There are three modes for specifying binding site coordinates.
1) Blind Docking
2) Use binding site coordinates selected by the PocketSelector node
3) Specify binding site coordinates in the input boxes
Docking Box Sizes (X, Y, Z)
There are two modes for specifying docking box sizes.
1) Use docking box sizes calculated by eBoxSize program
2) Specify docking box sizes in the input boxes
Please visit a eBoxSize web site (http://brylinski.cct.lsu.edu/content/docking-box-size) for further information.
=Ports=
in-port0(top): an absolute path of a PDB format file.
in-port1(bottom): an absolute path of a PDB format file.
out-port: an absolute path of output files.
=Options=
Binding Site Coordinates (X, Y, Z)
There are three modes for specifying binding site coordinates.
1) Blind Docking
2) Use binding site coordinates selected by the PocketSelector node
3) Specify binding site coordinates in the input boxes
Docking Box Sizes (X, Y, Z)
There are two modes for specifying docking box sizes.
1) Use docking box sizes calculated by eBoxSize program
2) Specify docking box sizes in the input boxes
Please visit a eBoxSize web site (http://brylinski.cct.lsu.edu/content/docking-box-size) for further information.
=Ports=
in-port0(top): an absolute path of a PDB format file.
in-port1(bottom): an absolute path of a PDB format file.
out-port: an absolute path of output files.
CentroidFold_AIST is a REST version of a CentroidFold KNIME node. CentroidFold predicts an RNA secondary structure from an RNA sequence and is one of the most accurate tools.
Please visit the CentroidFold Web site (http://medals.jp/elist/detail/17.html) for further information.
=Options=
Input type: select an input type format from FASTA or ClustalW.
Output: specify an output directory for execution result file.
Weight of base pairs: select a gamma value of weight of base pairs.
Advanced: set advanced other options (optional)
=Ports=
in-port: an absolute path of an input file.
out-port: absolute paths of output files.
Please visit the CentroidFold Web site (http://medals.jp/elist/detail/17.html) for further information.
=Options=
Input type: select an input type format from FASTA or ClustalW.
Output: specify an output directory for execution result file.
Weight of base pairs: select a gamma value of weight of base pairs.
Advanced: set advanced other options (optional)
=Ports=
in-port: an absolute path of an input file.
out-port: absolute paths of output files.
This program analyze ligand-receptor docking results using princinal component analysis (PCA) and clustering methods, via REST.
=Options=
Select Output Directory: Specify an absolute path of a directory for storing results of DockingAnalyzer.
=Ports=
in-port: an absolute path of a AutoDock-vina result files (PDF format).
out-port: an absolute path of output directory and receptor PDB file.
=Options=
Select Output Directory: Specify an absolute path of a directory for storing results of DockingAnalyzer.
=Ports=
in-port: an absolute path of a AutoDock-vina result files (PDF format).
out-port: an absolute path of output directory and receptor PDB file.
FastaFileReader sets an absolute path of a FASTA file to out port.
=Options=
Fasta File: set an absolute path of a FASTA file.
=Ports=
out-port: an absolute path of a FASTA file.
=Options=
Fasta File: set an absolute path of a FASTA file.
=Ports=
out-port: an absolute path of a FASTA file.
This node executes fpocket2, which is protein pocket (cavity) detection algorithm based on Voronoi tessellation, via REST.
Please visit a fpocket2 web site (http://fpocket.sourceforge.net/) for further information.
=Options=
Select Output Directory: specify an absolute path of a directory for storing results of fpocket2_AIST.
=Ports=
in-port: an absolute path of a PDB file.
out-port: an absolute path of a directory for storing results of fpocket2_AIST.
Please visit a fpocket2 web site (http://fpocket.sourceforge.net/) for further information.
=Options=
Select Output Directory: specify an absolute path of a directory for storing results of fpocket2_AIST.
=Ports=
in-port: an absolute path of a PDB file.
out-port: an absolute path of a directory for storing results of fpocket2_AIST.
This program makes a PDB formatted file which is stored user specified fragment PDB.
=Options=
start residue (base) number: a start residue (base) number of a fragment PDB user need.
end residue (base) number: an end residue (base) number of a fragment PDB user need.
=Ports=
in-port: an absolute path of a PDB File.
out-port: an absolute path of a fragment PDB file.
=Options=
start residue (base) number: a start residue (base) number of a fragment PDB user need.
end residue (base) number: an end residue (base) number of a fragment PDB user need.
=Ports=
in-port: an absolute path of a PDB File.
out-port: an absolute path of a fragment PDB file.
HtmlView displays a (result) file as HTML.
=Ports=
in-port: An absolute path of the (result) file.
=Views=
display the (result) file as HTML.
=Ports=
in-port: An absolute path of the (result) file.
=Views=
display the (result) file as HTML.
IPknot_AIST executes IPknot which predicts RNA pseudoknot based on maximizing expected accuracy.
Please visit a IPknot web site (http://medals.jp/elist/detail/154.html) for further information.
=Options=
Select Output Directory: specify an absolute path of a directory for storing results of IPknot.
-IPknot options-
-t th: threshold of base-pairing probabilities for each level
-g gamma: weight for true base-pairs equivalent to -t 1/(gamma+1)(default: -g 2 -g 4)
-e model: probabilistic model (default: McCaskill)
-r n: the number of the iterative refinement (default: 0)
-i: allow isolated base-pairs
-b: output the prediction by BPSEQ format
-P param: read the energy parameter file for the Vienna RNA package
=Ports=
in-port: an absolute path of a FASTA format file (RNA).
out-port: an absolute path of an output file.
Please visit a IPknot web site (http://medals.jp/elist/detail/154.html) for further information.
=Options=
Select Output Directory: specify an absolute path of a directory for storing results of IPknot.
-IPknot options-
-t th: threshold of base-pairing probabilities for each level
-g gamma: weight for true base-pairs equivalent to -t 1/(gamma+1)(default: -g 2 -g 4)
-e model: probabilistic model (default: McCaskill)
-r n: the number of the iterative refinement (default: 0)
-i: allow isolated base-pairs
-b: output the prediction by BPSEQ format
-P param: read the energy parameter file for the Vienna RNA package
=Ports=
in-port: an absolute path of a FASTA format file (RNA).
out-port: an absolute path of an output file.
JmolForModeller executes Jmol, which is a application of molecule viewer. This node needs to connect to Modeller_AIST node.
Please visit a Jmol web site (http://jmol.sourceforge.net) for further information.
=Ports=
in-port: an absolute path of a directory storing results.
=Views=
A pop up dialog is displayed as follows:
Modeller_AIST: display model numbers and the objective function values.
MergeTargetAndLigand, InitMinMM_AIST: display model numbers and the energy scores.
RASSIE_AIST, Rascal_AIST: display model numbers.
The user can select only one radio button. After selecting radio button, the user can launch Jmol on pressing "Execute Jmol" button.
Please visit a Jmol web site (http://jmol.sourceforge.net) for further information.
=Ports=
in-port: an absolute path of a directory storing results.
=Views=
A pop up dialog is displayed as follows:
Modeller_AIST: display model numbers and the objective function values.
MergeTargetAndLigand, InitMinMM_AIST: display model numbers and the energy scores.
RASSIE_AIST, Rascal_AIST: display model numbers.
The user can select only one radio button. After selecting radio button, the user can launch Jmol on pressing "Execute Jmol" button.
LSDBCrossSearch reads a (Multi-)FASTA file and displays header lines of all sequences contained in the file. Then, by specifying some search words with search identifiers and submitting in a view picture plane of this node, a web browser is opened and an LSDB (Life Science DataBase) cross search is executed on the LSDB web page.
Please visit the LSDB Cross Search Web site (http://lifesciencedb.jp/dbsearch/)(Japanese version only) for further information.
=Ports=
in-port: an absolute path of the (Multi-)FASTA file.
=Views=
FASTA Header Lists: displays header lines of all sequences contained in the (Multi-)FASTA file.
LSDB Cross Search: displays a text box where can input some search words with search identifiers. By specifying search words and clicking a "LSDB cross search" button, a web browser is opened and displays search results.
Search identifiers:
AND: ' '(space) e.g. 'network socket'
OR : '|'(pipe) e.g. 'network | socket'
XOR: '!'(exclamation) e.g. 'network ! socket'
Wild Card: '*'(asterisk) e.g. 'inter*', `sphere`
Priority order: '|' > ' '(space), '!'
Please visit the LSDB Cross Search Web site (http://lifesciencedb.jp/dbsearch/)(Japanese version only) for further information.
=Ports=
in-port: an absolute path of the (Multi-)FASTA file.
=Views=
FASTA Header Lists: displays header lines of all sequences contained in the (Multi-)FASTA file.
LSDB Cross Search: displays a text box where can input some search words with search identifiers. By specifying search words and clicking a "LSDB cross search" button, a web browser is opened and displays search results.
Search identifiers:
AND: ' '(space) e.g. 'network socket'
OR : '|'(pipe) e.g. 'network | socket'
XOR: '!'(exclamation) e.g. 'network ! socket'
Wild Card: '*'(asterisk) e.g. 'inter*', `sphere`
Priority order: '|' > ' '(space), '!'
MergeTargetAndLigand is a node that a target data and a ligand data (PDB-format) are merged into a single file.
=Ports=
in-port: an absolute paths of a result directory (storing ligand files) and of a target data file.
out-port: an absolute paths of a result directory (storing merged files).
=Ports=
in-port: an absolute paths of a result directory (storing ligand files) and of a target data file.
out-port: an absolute paths of a result directory (storing merged files).
MinMM_AIST performs energy minimization and MM and returns the results of MM via REST.
Input files should be located under ligand number as follows:
1/PL.crd
1/PL.pdb
1/PL.top
1/ligand.prep
2/PL.crd
2/PL.pdb
2/PL.top
2/ligand.prep
.
.
.
1: ligand number
PL.crd: protein-ligand complex coordinate file (amber format)
PL.pdb: protein-ligand complex PDB file (for a reference, optional)
PL.top: protein-ligand complex topology file (amber format)
ligand.prep: ligand prep file (amber format)
=Options=
Select Output Directory: specify an absolute path of a directory for storing results of InitMinMM_AIST.
=Ports=
in-port: an absolute path of a tar file of MmPrep result.
out-port: an absolute path of a tar file of MM result.
Input files should be located under ligand number as follows:
1/PL.crd
1/PL.pdb
1/PL.top
1/ligand.prep
2/PL.crd
2/PL.pdb
2/PL.top
2/ligand.prep
.
.
.
1: ligand number
PL.crd: protein-ligand complex coordinate file (amber format)
PL.pdb: protein-ligand complex PDB file (for a reference, optional)
PL.top: protein-ligand complex topology file (amber format)
ligand.prep: ligand prep file (amber format)
=Options=
Select Output Directory: specify an absolute path of a directory for storing results of InitMinMM_AIST.
=Ports=
in-port: an absolute path of a tar file of MmPrep result.
out-port: an absolute path of a tar file of MM result.
MinMMCandidateSelector opens a pop-up window which lists Rebuild model numbers and the user can select one model for MinMM.
If the user connects Rebuild to DockingAnalyzer via flow variables ports (red ports), this program doesn't open the pop-up window because of already selecting candidates of each cluster calculated by DockingAnalyzer, and is followed by MinMM.
=Ports=
in-port: An absolute path of a directory stored Rebuild output files.
out-port: An absolute path of a directory stored Rebuild output files.
If the user connects Rebuild to DockingAnalyzer via flow variables ports (red ports), this program doesn't open the pop-up window because of already selecting candidates of each cluster calculated by DockingAnalyzer, and is followed by MinMM.
=Ports=
in-port: An absolute path of a directory stored Rebuild output files.
out-port: An absolute path of a directory stored Rebuild output files.
PdbFileReader sets an absolute path of a PDB file to out port.
=Options=
PDB File: set an absolute path of a PDB file.
=Ports=
out-port: an absolute path of a PDB file.
=Options=
PDB File: set an absolute path of a PDB file.
=Ports=
out-port: an absolute path of a PDB file.
PocketSelector node launches a viewer to select a pocket site. User can select only one pocket site on the viewer.
=Ports=
in-port: an absolute path of a directory stored Qsite results.
out-port: an absolute path of a directory stored Qsite results.
=Ports=
in-port: an absolute path of a directory stored Qsite results.
out-port: an absolute path of a directory stored Qsite results.
RactIP_AIST executes RactIP which predicts RNA-RNA interaction using integer programming.
Please visit a RactIP web site (http://medals.jp/elist/detail/153.html) for further information.
=Options=
Select Output Directory: specify an absolute path of a directory for storing results of RactIP.
-RactIP options-
-p: do not use the constraints for interenal pseudoknots.
-a alpha: weight for hybridation probabilities (default: 0.5).
-t th_bp: threshold of base-pairing probabilities (default: 0.5).
-u th_hy: threshold of hybridazation probabilities (default: 0.2).
-m: use McCaskill model (default: CONTRAfold model).
-i: allow isolated base-pairs.
=Ports=
in-port0(top): an absolute path of a single FASTA format file (RNA).
in-port1(bottom): an absolute path of a single FASTA format file (RNA).
out-port: an absolute path of an output file.
Please visit a RactIP web site (http://medals.jp/elist/detail/153.html) for further information.
=Options=
Select Output Directory: specify an absolute path of a directory for storing results of RactIP.
-RactIP options-
-p: do not use the constraints for interenal pseudoknots.
-a alpha: weight for hybridation probabilities (default: 0.5).
-t th_bp: threshold of base-pairing probabilities (default: 0.5).
-u th_hy: threshold of hybridazation probabilities (default: 0.2).
-m: use McCaskill model (default: CONTRAfold model).
-i: allow isolated base-pairs.
=Ports=
in-port0(top): an absolute path of a single FASTA format file (RNA).
in-port1(bottom): an absolute path of a single FASTA format file (RNA).
out-port: an absolute path of an output file.
Rascal_AIST executes Rascal, which is a prediction tool for tertiary structure of RNA based on the fragment assembly algorithm following given secondary structure, via REST. Rascal can predict several RNA-RNA interacting structures such as kissing-loops.
=Options=
Select Output Directory: specify an absolute path of a directory for storing results of Rascal.
=Ports=
in-port: an absolute path of a RactIP result file.
out-port: an absolute path of a Rascal result directory.
=Options=
Select Output Directory: specify an absolute path of a directory for storing results of Rascal.
=Ports=
in-port: an absolute path of a RactIP result file.
out-port: an absolute path of a Rascal result directory.
RASSIE_AIST executes RASSIE(RNA Assembler using Secondary Structure Information Effectively), which is a tool for predicting RNA tertiary structures using known secondary structure information, via REST.
=Options=
Select Output Directory: specify an output directory for execution result file.
-RASSIE options-
-q Nstruct
-ins insertion_num
-clst -outclst n
-ins_chain
=Ports=
in-port: an absolute path of a result file of RNA secondary structure prediction.
out-port: absolute paths of RASSIE result files.
=Options=
Select Output Directory: specify an output directory for execution result file.
-RASSIE options-
-q Nstruct
-ins insertion_num
-clst -outclst n
-ins_chain
=Ports=
in-port: an absolute path of a result file of RNA secondary structure prediction.
out-port: absolute paths of RASSIE result files.
This program rebuilds ligand structure models using their fragments and an original structure information, via REST.
=Options=
Select Output Directory: specify an absolute path of a directory for storing results of Rebuild.
=Ports=
in-port: an absolute path of a AutoDock-vina result files (PDF format).
out-port: an absolute path of output directory.
=Options=
Select Output Directory: specify an absolute path of a directory for storing results of Rebuild.
=Ports=
in-port: an absolute path of a AutoDock-vina result files (PDF format).
out-port: an absolute path of output directory.
RNA2DChecker_AIST checks whether RNA 2D structure is suitable for executing RASSIE, via REST.
=Ports=
in-port: an absolute path of a result file of RNA secondary structure prediction.
out-port: an absolute path of a result file of RNA secondary structure prediction.
=Ports=
in-port: an absolute path of a result file of RNA secondary structure prediction.
out-port: an absolute path of a result file of RNA secondary structure prediction.
This node selects a sequence from SPARQL results.
=Ports=
in-port: an absolute path of a SPARQL result file.
out-port: an absolute path of selected sequence FASTA-format file.
=Ports=
in-port: an absolute path of a SPARQL result file.
out-port: an absolute path of selected sequence FASTA-format file.
A SetVariable node sets an active flow variable output port by specifying integer 0, 1, or 2 in this node's Configure dialog.
=Dialog Options=
Active flow variable output port number:
0: first flow variable output port
1: second flow variable output port
2: third flow variable output port
=Dialog Options=
Active flow variable output port number:
0: first flow variable output port
1: second flow variable output port
2: third flow variable output port
This node executes SPARQL search against each SPARQL endpoint (fRNAdb, SEVENS, UNIPROT (reviewed human), PDB (100% identity non-redundant) and KEGG - pathway) using keywords, species names (not available for UNIPROT), minimum and maximum sequence length thresholds, and Resolution (for PDB). The user can output the SPARQL results as a FASTA-format (for "SequenceSelector" node) or Tab-delimited output file.
The user can also input SPARQL sentence in "Input SPARQL Query" text area. If the user input the SPARQL sentence, other options are entirely-ignored except for "Output directory" option.
=Options=
Output directory: specify an absolute path of directory to store SPARQL results.
Sparql endpoints: specify SPARQL endpoints.
Species name: specify (a) species name(s) as search parameters.
Keyword: specify (a) keyword(s) as search parameters (not available for UNIPROT).
Minimum sequence length: specify a minimum sequence length thresholds as search parameters.
Maximum sequence length: specify a maximum sequence length thresholds as search parameters.
Resolution: specify a Resolution (for PDB) as search parameters.
Pathway: specify a pathway (for KEGG-pathway) as a search parameter.
Output format: specify either FASTA or Tab-delimited.
Advanced: input SPARQL sentence.
=Ports=
out-port: an absolute path of a FASTA-format or Tab-delimited output file.
The user can also input SPARQL sentence in "Input SPARQL Query" text area. If the user input the SPARQL sentence, other options are entirely-ignored except for "Output directory" option.
=Options=
Output directory: specify an absolute path of directory to store SPARQL results.
Sparql endpoints: specify SPARQL endpoints.
Species name: specify (a) species name(s) as search parameters.
Keyword: specify (a) keyword(s) as search parameters (not available for UNIPROT).
Minimum sequence length: specify a minimum sequence length thresholds as search parameters.
Maximum sequence length: specify a maximum sequence length thresholds as search parameters.
Resolution: specify a Resolution (for PDB) as search parameters.
Pathway: specify a pathway (for KEGG-pathway) as a search parameter.
Output format: specify either FASTA or Tab-delimited.
Advanced: input SPARQL sentence.
=Ports=
out-port: an absolute path of a FASTA-format or Tab-delimited output file.
This node executes SPARQL using user specified SPARQL query and endpoint.
=Options=
Output directory: specify an absolute path of directory to store SPARQL results.
Endpoint: specify an endpoint.
Advanced: input SPARQL sentence.
=Ports=
out-port: Specify an absolute path of a Tab-delimited output file.
=Options=
Output directory: specify an absolute path of directory to store SPARQL results.
Endpoint: specify an endpoint.
Advanced: input SPARQL sentence.
=Ports=
out-port: Specify an absolute path of a Tab-delimited output file.
REST EXECUTION ERROR (GENERAL)
The KNIME node execution is stopped and an error messege is displayed in a pop-up window.
=Messege=
REST execution error. Please check your input file. If you have any questions, please let us know (workflow@medals.jp).
=Nodes=
All nodes executed via REST.
=Messege=
REST execution error. Please check your input file. If you have any questions, please let us know (workflow@medals.jp).
=Nodes=
All nodes executed via REST.
REST EXECUTION ERROR (BUSY)
This error occurs when the REST server is busy. The KNIME node execution is stopped and an error messege is displayed in a pop-up window.
=Messege=
Sorry, system is busy. Please try later.
=Nodes=
All nodes executed via REST.
=Messege=
Sorry, system is busy. Please try later.
=Nodes=
All nodes executed via REST.
REST EXECUTION ERROR (TIME OUT)
This error occurs when the execution time is over allowed time. The time is different by each node and set up at least over three hours. The KNIME node execution is stopped and an error messege is displayed in a pop-up window.
=Messege=
Time out error has occured. "program name" program failed in calculating in time.
=Nodes=
All nodes executed asynchronously via REST.
=Messege=
Time out error has occured. "program name" program failed in calculating in time.
=Nodes=
All nodes executed asynchronously via REST.
REST EXECUTION ERROR (FILE SIZE)
This error occurs when the total size of the user input file is over 32MB. The KNIME node execution is stopped and an error messege is displayed in a pop-up window.
=Messege=
The total file size is "total size" bytes. Maximum total size is 32MB.
=Nodes=
All nodes executed via REST.
=Messege=
The total file size is "total size" bytes. Maximum total size is 32MB.
=Nodes=
All nodes executed via REST.
SETTING ERROR (MULTI-FASTA)
This error occurs when a multi-FASTA file is entered into the nodes that only permit a single FASTA format. The KNIME node execution is stopped and an error messege is displayed in a pop-up window.
=Messege=
A Multi-FASTA file is not permitted. Please input a single FASTA file.
=Nodes=
All nodes that only permit a single FASTA format as input.
=Messege=
A Multi-FASTA file is not permitted. Please input a single FASTA file.
=Nodes=
All nodes that only permit a single FASTA format as input.
SETTING ERROR (SEQUENCE LENGTH)
This error occurs when a length of an input sequence is over allowed size. The KNIME node execution is stopped and an error messege is displayed in a pop-up window.
=Messege=
Sequence length limit is "sequence length"aa. Please input more short sequence.
=Nodes=
All nodes that have an allowed length of sequence.
=Messege=
Sequence length limit is "sequence length"aa. Please input more short sequence.
=Nodes=
All nodes that have an allowed length of sequence.
SETTING ERROR (FILE NOT FOUND)
This error occurs when your query file is not found. The KNIME node execution is stopped and an error messege is displayed in a pop-up window.
=Messege=
Your setting file does not exist.
=Nodes=
AlignmentFileReader, FastaFileReader, Mol2FileReader and PdbFileReader nodes.
=Messege=
Your setting file does not exist.
=Nodes=
AlignmentFileReader, FastaFileReader, Mol2FileReader and PdbFileReader nodes.
EXECUTION ERROR (NO HIT)
This error occurs when search results are not found. The KNIME node execution is stopped and an error messege is displayed in a pop-up window.
=Messege=
No results found. Please change your query conditions.
=Nodes=
CompoundQuery_AIST node.
=Messege=
No results found. Please change your query conditions.
=Nodes=
CompoundQuery_AIST node.
SPARQL ERROR (NO HIT)
This error occurs when SPARQL search results are not found. The KNIME node execution is stopped and an error messege is displayed in a pop-up window.
=Messege=
SPARQL RESULTS: 0 data hits. No hit. Please change your search conditions.
=Nodes=
All Sparql node.
=Messege=
SPARQL RESULTS: 0 data hits. No hit. Please change your search conditions.
=Nodes=
All Sparql node.
SPARQL ERROR (INVALID ENDPOINT)
This error occurs when SPARQL endpoints are invalid. The KNIME node execution is stopped and an error messege is displayed in a pop-up window.
=Messege=
Plase check SPARQL endpoints.
=Nodes=
All Sparql node.
=Messege=
Plase check SPARQL endpoints.
=Nodes=
All Sparql node.
REST/REST services
The user executes programs on servers at AIST and receives the results using REST interface. (Internet connection is required. )
