Active Workflow >> Local PC >> RNA Structure Prediction Active Workflow


This workflow performs RNA structure prediction.


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Please refer to a manual of each version for installation and usage.

-- RNA Structure Prediction Workflow (Windows) 
RNA Structure Prediction Workflow requires the following files to run: (click to download)
1. KNIME package (.zip zipped file)
2. Installation manual for KNIME and combination type active workflow
3. RNA Structure Prediction Workflow User's Manual
4. readMe


-- RNA Structure Prediction Workflow (Linux 64bit) 
RNA Structure Prediction Workflow requires the following files to run: (click to download)
1. KNIME package (.tgz gzipped file, 64bit)
2. Installation manual for KNIME and combination type active workflow
3. RNA Structure Prediction Workflow User's Manual
4. readMe


-- RNA Structure Prediction Workflow (MacOS) 
RNA Structure Prediction Workflow requires the following files to run: (click to download)
1. KNIME package (.tgz gzipped file)
2. Installation manual for KNIME and combination type active workflow
3. RNA Structure Prediction Workflow User's Manual
4. readMe

Samples for testing CentroidFold
Sample 1 (Multi-FASTA)
Sample 2 (Multiple alignment in ClustalW format)

Samples for testing IPknot
Sample 1 (FASTA)
Sample 2 (FASTA)
Sample 3 (Multi-FASTA)
Sample 4 (Multiple alignment in ClustalW format)

Samples for testing RactIP
Sample pair 1 (query, FASTA)
Sample pair 1 (target, FASTA)
Sample pair 2 (query, FASTA)
Sample pair 2 (target, FASTA)
Sample pair 3 (query, FASTA)
Sample pair 3 (target, FASTA)

Samples for testing RASSIE
Sample 1 (FASTA)
Sample 2 (FASTA)
Sample 3 (FASTA)
Sample 4 (FASTA)
Sample 5 (FASTA)
Sample 6 (FASTA pdb_id:3AVG) *

Samples for testing Rascal
Sample 1a (FASTA)
Sample 1b (FASTA)
Sample Patisirana_a (FASTA)*
Sample Patisirana_b (FASTA)*

Sample base-pair matrix file for Pegaptanib (Macugen)*

Example for RNA-protein docking*
Sample RNA (Pegaptanib pdb file)
Sample Protein (pdb)

* S. Yamasaki,T. Amemiya,Y. Yabuki,K. Horimoto and K. Fukui*, "ToGo-WF: Prediction of RNA tertiary structures and RNA–RNA/Protein interactions using the KNIME workflow", Journal of Computer-Aided Molecular Design, Volume 33, Issue 5, pp 497–507 (2019).

RNA Structure Prediction-K Active Workflow is lisenced under Creative Commons Lisence. Please see the readMe file for credit (reference).

If you want to take advantage of this workflow for commercial purposes, please contact us for details.

Creative Commons License
RNA Structure Prediction WF is licensed under a Creative Commons Non-commercial 4.0 International License.